Sundquist A , Fratkin E, Batzoglou S. Effect of genetic divergence in identifying ancestral origin using HAPAA. [PDF] Genome Research (GR), 676-682 March 18, 2008.
Naughton B, Fratkin E, Batzoglou S, Brutlag DL. A Graph-Based Motif Detection Algorithm Model Complex Nucleotide Dependencies in Transcription Factor Binding Sites. [PDF] Nucleic Acids Research (NAR), 10:1093 Oct 13, 2006.
Fratkin E, Naughton B, Brutlag DL, Batzoglou S. Finding Regulatory Motifs with Maximum Density Subgraphs. [PDF] Bioinformatics 22: e150–e157, 2006.
Chen M , Kiciman E ,Fratkin E, Brewer E , Fox A . Pinpoint: Problem Determination in Large, Dynamic, Internet Services. [PDF] In Proceedings of the International Conference on Dependable Systems and Networks (IPDS Track), Washington D.C., 2002.
Conference Talks and Posters
Fratkin E. Applications of Non-Parametric Algorithms In Computational Biology. [Flash] Univeristy Oral Examination (Thesis Defense), Stanford CA, 2008.
Sundquist A , Fratkin E, Batzoglou S. Effect of Genetic Divergence in Identifying Ancestral Origin using HAPAA. In Proceedings of the Research in Computational Molecular Biology (RECOMB), Singapore, 2008.
Sundquist A , Fratkin E, Batzoglou S. Effect of Genetic Divergence in Identifying Ancestral Origin. Poster presented at International Conference On Intelligent Systems For Molecular Biology (ISMB), Vienna, Austria, 2007.
Fratkin E, Naughton B, Brutlag DL, Batzoglou S. Finding Regulatory Motifs with Maximum Density Subgraphs. [PDF] In Proceedings of the International Conference On Intelligent Systems For Molecular Biology (ISMB), Fortaleza, Brazil, 2006.